Draw circos plot of Entrain ligands.
draw_entrain_circos.Rd'Given a seurat object containing Entrain results, draw the ligands driving the observed velocities or trajectories..
Usage
draw_entrain_circos(
obj,
path_name = NULL,
vcluster = NULL,
n_top_ligands = 10,
lr_network,
weighted_networks,
palette = "Spectral"
)Arguments
- obj
A seurat object containing the Entrain result from entrain_velocity or get_traj_ligands()
- path_name
Optional. String indicating the name of the trajectory path. Use this if you want to plot ligands associated with pseudotime branches.
- vcluster
Optional. String indicating the name of the velocity cluster. Use this if you wish to plot ligands associated with velocity clusters.
- n_top_ligands
Number of top ligands to plot
- lr_network
NicheNet ligand-receptor pairs data file.
- weighted_networks
NicheNet weighted networks.
- palette
RColorBrewer color palette for plotting sender cell clors.