Interactive selection of sender clusters.

Choosing potential sender cell clusters in a GUI. Inspired from Monocle3's interactive workflow.

Usage

get_senders_interactive(
  sender_obj,
  sender_cluster_key,
  reduction_key = NULL,
  lr_network
)

Arguments

sender_obj

Seurat object containing niche cell data

sender_cluster_key

column name in sender_obj@meta.data that denotes the clusters.

reduction_key

Seurat reduction key for dimension reduction visualization.

lr_network

NicheNet ligand-receptor pairs data file.

Value

A vector of cluster names.