Heatmap plot of top trajectory gene covariances.
plot_covarying_genes_heatmap.RdRecovers the covariance of the top genes that covary with pseudotime and plots it as a 1d-heatmap.
Usage
plot_covarying_genes_heatmap(
obj,
path = paths[1],
n_top_genes = 10,
metric = "Covariances"
)Arguments
- obj
A seurat object that has been analyzed with get_path_ligands or get_traj_ligands_monocle.
- path
Name of list element in obj@misc$entrain$paths corresponding to the trajectory path that you wish to visualize.
- n_top_genes
Number of top covarying genes to visualize. Default 10.
- metric
One of "Covariances" or "Correlations". Metric used during fitting. Default "Covariance"