Plots a heatmap of ligand-target regulatory potentials extracted from NicheNet.
plot_velocity_ligand_targets.Rd'Visualize the ligand-target regulatory relationships that are driving the analyzed velocities.
Usage
plot_velocity_ligand_targets(
obj,
n_top_targets = 10,
velocity_cluster = NULL,
n_top_ligands = 10,
ligand_target_matrix,
color_low = "#f6ffff",
color_high = "#01bfc4",
colorscale = "Greens"
)Arguments
- obj
A seurat object that has been analyzed with entrain_velocity
- n_top_targets
Number of top likelihood target genes to visualize. Default 10.
- velocity_cluster
Name of the velocity cluster whose regulatory relationships you wish to plot.
- n_top_ligands
Number of top ligands to visualize. Default 10.
- ligand_target_matrix
NicheNet ligand-target data file.
- color_low
Hex code of lower limit
- color_high
Hex code of upper limit.
- colorscale
Name of an RColorBrewer palette. Default
Greens